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Part III. SPECIAL MICROBIOLOGY

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Chapter 14. Microbiological and immunological diagnosis (E.A. Bogdanova)

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Medical Microbiology, Virology, Immunology : textbook : Vol. 2.

Table of contents

COMPOSITE AUTHORS

LIST OF ABBREVIATIONS

Part III. SPECIAL MICROBIOLOGY -

Chapter 14. Microbiological and immunological diagnosis (E.A. Bogdanova)

14.1. Characteristics of microbiological, virological and immunological laboratories

14.2. Equipment of microbiological and immunological laboratories

14.3. Safety rules in microbiological laboratory

14.4. Methods of microbiological diagnosis of infectious diseases

14.4.1. Methods of diagnosing bacterial infections

14.4.2. Methods of diagnosing viral infections

14.4.3. Special aspects of microbiological diagnosis of mycosis

14.4.4. Special aspects of microbiological diagnosis of protozoan infections

14.5. Collection, storage and transportation of material for research

Revision tasks (for self-control)

Chapter 15. Special bacteriology

15.1. Cocci (O.V. Bukharin)

15.1.1. Gram-positive aerobic cocci

Staphylococci (genus Staphylococcus)

Streptococci (genus Streptococcus)

Enterococci (genus Enterococcus)

15.1.2. Gram-negative aerobic cocci (genus Neisseria)

15.1.3. Anaerobic cocci

15.2. Gram-negative rod-shaped facultative anaerobes

15.2.1. Enterobacteria (family Enterobacteriaceae) (M.N. Boichenko)

Esherichia (genus Escherichia)

Klebsiella (genus Klebsiella)

Shigella (genus Shigella)

Salmonella (genus Salmonella)

Pathogens of typhoid and paratyphoid fever

Pathogen of plague (Yersinia pestis)

15.2.2. Vibrio (family Vibrionaceae)

Pathogen of cholera (Vibrio cholerae)

Aeromonas (genus Aeromonas)

15.2.3. Hemophilic bacteria (genus Haemophilus) (E.V. Budanova)

Haemophilus influenzae

Haemophilus influenzae biogroup aegyptius

Haemophilus ducreyi

Other bacterial species of the genus Haemophilus

15.3. Gram-negative aerobic rod-shaped bacteria

15.3.1. Bordetella (genus Bordetella) (E.V. Budanova)

15.3.2 Brucella (genus Brucella) (M.N. Boichenko)

15.3.3. Francisella (genus Francisella) (M.N. Boichenko)

15.3.4. Legionella (genus Legionella) (M.N. Boichenko)

15.3.5. Coxiella. Pathogen of Q-fever (Coxiella burnetii ) (M.N. Boichenko)

15.3.6. Bartonella (genus Bartonella) (M.N. Boichenko)

15.3.7. Aerobic non-fermentative gram-negative rod-shaped bacteria (E.V. Budanova)

Pseudomonas (genus Pseudomonas)

Burkholderia (genus Burkholderia)

15.4. Gram-negative anaerobic rod-shaped bacteria

15.4.1. General characteristics of gram-negative asporous anaerobic bacteria

15.4.2. Veillonella (genus Veillonela)

15.4.3. Bacteroides (genus Bacteroides), prevotella (genus Prevotella), porphyromonas (genus Porphyromonas)

15.4.4. Fusobacteria (genus Fusobacterium), Leptotrichia (genus Leptotrichia)

15.5. Sporous gram-positive rod-shaped bacteria

15.5.1. Bacillus anthracis (genus Bacillus) (M.N. Boichenko)

15.5.2. Sporous bacteria of the genus Clostridium (V.B. Sboychakov)

Pathogens of gas gangrene

Pathogen of tetanus (Clostridium tetani)

Pathogens of botulism (Clostridium botulinum)

Pathogens of pseudomembranous colitis (Clostridium difficili)

Microbiological diagnosis of clostridiosis

15.6. Gram-positive regular rod-shaped bacteria

15.6.1. Lactobacilli (genus Lactobacillus) (E.P. Pashkov)

15.6.2. Listeria (genus Listeria) (M.N. Boichenko)

15.7. Gram-positive irregularly shaped branching rods

15.7.1. Corynebacteria (genus Corynebacterium)(D.N. Nechaev, E.O. Kravtsova)

Pathogen of diphtheria (Corynebacterium diphtheriae)

Coryneform bacteria

15.7.2. Mycobacteria (family Mycobacteriaceae)

Pathogens of tuberculosis

Non-tuberculous mycobacteria (D.N. Nechaev, V.B. Sboychakov)

Leprosy pathogen (D.N. Nechaev)

15.7.3. Actinomycetes (genus Actinomyces) (E.O. Kravtsova)

15.7.4. Nocardia (genus Nocardia) (E.O. Kravtsova)

15.7.5. Bifidobacteria, eubacteria, propionibacteria, mobiluncus, gardnerella

Propionibacteria

Mobiluncus (genus Mobiluncus)

Gardnerella (genus Gardnerella)

15.8. Spirochaetes and other spiral bacteria

15.8.1. Treponema (genus Treponema) (V.B. Sboychakov, M.N. Boichenko)

Pathogen of syphilis (Treponema pallidum)

Other pathogenic treponema species and diseases caused by them

15.8.2. Borreliae (Borrelia) (M.N. Boichenko)

Pathogens of relapsing fever

Pathogens of lyme disease (B. burgdorferi, B. garini, B. afzelii)

15.8.3. Leptospira (genus Leptospira) (M.N. Boichenko)

15.8.4. Campylobacter (genus Campylobacter) (Yu.V. Nesvizhsky, M.N. Boichenko)

15.8.5. Helicobacter (genus Helicobacter) (Yu.V. Nesvizhsky)

15.9. Rickettsiae (family rickettsiaceae) (N.V. Rudakov, Yu.V. Nesvizhsky)

15.9.1. Family Rickettsiaceae

Representatives of genus Rickettsia

Pathogens of tsutsugamushi disease (genus Orìentía)

15.9.2. Pathogens of human anaplasmosis (family Anaplasmataceae)

15.10. Chlamydia (family Chlamydiaceae) (V.N. Tsarev, G.N. Usatova)

15.10.1. Pathogens of trachoma, conjunctivitis, urogenital chlamydia infection, etc. (С. trachomatis)

(С. trachomatis)

15.10.2. Pathogen of pneumonia (C. pneumoniae)

15.10.3. Pathogen of ornithosis

(С. psittaci )

15.11. Mycoplasma (family Mycoplasmataceae) (G.N. Usatova, V.N. Tsarev)

15.11.1. Pathogens of respiratory mycoplasmosis

15.11.2. Pathogens of urogenital mycoplasmosis and ureaplasmosis

Revision tasks (for self-control)

Chapter 16. Special virology

16.1. RNA-containing viruses

16.1.1. Picornaviruses (family Picomaviridae)

Foot-and-mouth disease viruses

Hepatitis A virus

16.1.2. Reoviruses (family Reoviridae) (A.S. Bykov)

16.1.3. Bunyaviruses (family Bunyaviridae) (D.N. Nechaev)

Virus of Crimean-Congo hemorrhagic fever (CCHF)

Viruses causing hantavirus infections: hemorrhagic fever with renal syndrome (HFRS) and hantaviral pulmonary syndrome

16.1.4. Togaviruses (family Togaviridae) (V.V. Zverev, D.N. Nechaev)

Viruses of the genus Alphavirus

16.1.5. Viruses of family Flaviviridae (V.V. Zverev, D.N. Nechaev)

Yellow fever virus

Tick-borne encephalitis virus

West Nile virus

16.1.6. Orthomyxoviruses (influenza viruses) (V.V. Zverev, L.I. Petrova)

16.1.7. Paramyxoviruses (family Paramyxoviridae) (A.S. Bykov)

Parainfluenza viruses

Epidemic parotitis virus

Virus of measles and subacute sclerosing panencephalitis

Human respiratory syncytial virus

16.1.8. Rhabdoviruses (Rhabdoviridae) (A.S. Bykov)

16.1.9. Filoviruses (family Filoviridae) (V.V. Zverev, L.I. Petrova)

16.1.10. Coronaviruses (family Coronaviridae)(V.V. Zverev, G.N. Usatova)

16.1.11. Human immunodeficiency virus (V.V. Zverev, M.N. Boichenko)

16.1.12. Arenaviruses (family Arenaviridae)(A.S. Bykov)

16.1.13. Hepatitis E virus (V.V. Zverev)

16.2. DNA-containing viruses

16.2.1. Adenoviruses (family Adenoviridae) (V.V. Zverev, L.I. Petrova)

16.2.2. Herpesviruses (Herpesviridae family) (V.V. Zverev, A.S. Bykov)

Herpes simplex virus

Varicella-zoster virus

Epstein-Barr virus

Cytomegalovirus

Human herpesviruses type 6, 7

and 8

16.2.3. Poxviruses (family Poxviridae) (A.S. Bykov)

Other human poxviruses

16.2.4. Hepadnaviruses (family Hepadnaviridae) (M.N. Boichenko)

16.3. Pathogens of parenteral viral hepatitis D, C, G (M.N. Boichenko)

16.3.1. Hepatitis D virus

16.3.2. Hepatitis C virus

16.3.3. Hepatitis G virus

16.4. Oncogenic viruses (M.N. Boichenko)

16.4.1. RNA-containing oncogenic viruses

16.4.2. DNA-containing oncogenic viruses

16.5. Slow viral infections and prion diseases (V.V. Zverev, A.S. Bykov)

Revision tasks (for self-control)

Chapter 17. Special mycology (A.S. Bykov)

17.1. Pathogens of superficial mycoses

17.2. Pathogens of epidermatomycosis

17.2.1. Pathogens of trichophytosis (genus Microsporum)

17.2.2. Pathogens of trichophytosis (genus Trichophyton)

17.2.3. Pathogen of favus (Trichophyton schoenleinii)

17.2.4. Pathogen of epidermophytosis inguinalis (Epidermophyton floccosum)

17.2.5. Pathogen of rubrophytosis (Trichophyton rubrum)

17.2.6. Pathogen of tinea pedis (Trichophyton interdigitale)

17.3. Pathogens of subcutaneous mycoses

17.3.1. Pathogen of sporotrichosis

17.3.2. Pathogens of chromoblastomycosis

17.3.3. Pathogens of pheohyphomycosis

17.3.4. Pathogens of mycetoma

17.4. Pathogens of systemic or deep mycoses

17.4.1. Coccidioidomycosis

17.4.2. Adiaspiromycosis

17.4.3. Histoplasmosis

17.4.4. Blastomycosis

17.4.5. Paracoccidioidomycosis

17.4.6. Cryptococcosis

17.5. Pathogens of opportunistic mycoses

17.5.1. Pathogens of candidiasis (genus Candida)

17.5.2. Pathogens of zygomycosis

17.5.3. Pathogens of aspergillosis (genus Aspergillus)

17.5.4. Pathogens of penicilliosis (genus Penicillium)

17.5.5. Pathogens of fusariosis (genus Fusarium)

17.5.6. Pathogen of pneumocystosis (Pneumocystis jiroveci)

17.5.7. Pathogens of microsporidiosis

17.6. Pathogens of mycotoxicoses

Chapter 18. Special protozoology (A.S. Bykov)

18.1. Sarcodina (amoebas)

18.2. Flagellates

18.2.1. Leishmania (genus Leichmania)

18.2.2. Trypanosomas (genus Trypanosoma)

18.2.3. Lamblia or giardia (genus Lamblia, Giardia)

18.2.4. Trichomonas (genus Trichomonas)

18.3.1. Plasmodium malariae (genus Plasmodium)

18.3.2. Babesia (genus Babesia)

18.3.3. Toxoplasma (genus Toxoplasma)

18.3.4. Cryptosporidium (genus Cryptosporidium)

18.5. Blastocystis (genus blastocystis)

Revision tasks for self-control to chapter 17, 18

Chapter 19. Clinical microbiology (E.A. Bogdanova)

19.1. Concept of clinical microbiology

19.2. Role of opportunistic organisms in the development of infection

19.3. Diseases caused by opportunistic organisms. concept of opportunistic infection, its features

19.4. Methods of diagnosing opportunistic infection

19.5. Concept of nosocomial infection

Revision tasks (for self-control)

TEST KEYS IN VOLUME 2 PART 3